In addition to the three known essential cis-acting chromosomal loci, origins, centromeres, and telomeres, we propose that all mammalian chromosomes also contain “Inactivation/Stability Centers” that display allele-restricted epigenetic regulation of protein coding and noncoding ASAR genes that are essential for replication and stability of each chromosome.įor the vast majority of mammalian DNA, homologous regions on chromosome pairs replicate in a highly synchronized manner 1, 2, 3. Disruption of noncoding RNA genes at five of five tested loci result in chromosome-wide delayed replication and chromosomal instability, validating their ASAR activity. To identify ASARs on all human chromosomes we utilize a set of distinctive ASAR characteristics that allow for the identification of hundreds of autosomal loci with epigenetically controlled, allele-restricted behavior in expression and replication timing of coding and noncoding genes, and is distinct from genomic imprinting. The three known ASAR genes are located on human chromosomes 6 and 15, and are essential for chromosome integrity. ASARs are long noncoding RNA genes that control replication timing of entire human chromosomes in cis.
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